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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124122885_124123594_R

Intron Information:

Intron Rank:
148866
Intron Class:
major
Intron Phase:
Intron Coordinates:
124122885 - 124123594
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAATTCC
5'SS Class:
major
3'SS Sequence:
TCACCTTCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTCACCTTCAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
70.3
34.6
Major BPS
68.7
0.46
1
71.3
34
Major PPT
70.5
0.46
0.9
66.4
34
Minor 5ss
37.2
-1.5
2.7
45.9
42.2
Minor BPS
51.6
0.03
2.1
66.76
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027555
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036688
124114365 - 124124553
10189
ENSAPLT00000047056
124119189 - 124124553
5365
ENSAPLT00000042170
124122116 - 124124553
2438