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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12412871_12412958_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12412871 - 12412958
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
LLARLCPNSTGAEIRSVCTE
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.4
0.68
1
81.8
27.5
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801