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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124130070_124130597_R

Intron Information:

Intron Rank:
132483
Intron Class:
major
Intron Phase:
Intron Coordinates:
124130070 - 124130597
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGATC
5'SS Class:
major
3'SS Sequence:
CATATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
71.5
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.4
0.75
0.8
80.7
36.4
Minor 5ss
37
-1.5
3.3
49
41.5
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032402
124129017 - 124132950
3934