About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124134739_124135772_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124134739 - 124135772
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
CTGTCCTCAACA
Flanking Amino Acid:
IATTEGKTPPTKCQCKIAPK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
71
0.47
0.9
66.1
34.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
70.2
0.63
1.6
75.56
42

Associated Gene:

Gene:
TFF2
Ensembl Gene ID:
ENSAPLG00000020197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017184
124134540 - 124138614
4075