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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124152328_124153698_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124152328 - 124153698
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAC
U12 Branch Point Sequence:
TGGCAATAGACT
Flanking Amino Acid:
LIGAASTSLQVATFVGPVTA
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
52.7
0.07
1
50.4
34.3
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
42.5
-0.5
2
59.81
43.2

Associated Gene:

Gene:
ABCG1
Ensembl Gene ID:
ENSAPLG00000008841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009239
124150379 - 124199566
49188