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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124155360_124157264_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124155360 - 124157264
Intron Length:
1905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGACTG
5'SS Class:
major
3'SS Sequence:
TCCTTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACTTTCTGATCA
Flanking Amino Acid:
RTFLTIMRDSVLTHLRITSH
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.5
44.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.9
0.63
0.8
72.9
32
Minor 5ss
37.8
-1.4
3.3
54.2
43.6
Minor BPS
54.7
0.14
1.7
66.1
40.4

Associated Gene:

Gene:
ABCG1
Ensembl Gene ID:
ENSAPLG00000008841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009239
124150379 - 124199566
49188