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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124158521_124159527_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124158521 - 124159527
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
CCTTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATCT
Flanking Amino Acid:
SAKLFELFDQLYVLSQGQCI
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.2
0.66
0.9
75.9
38
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
ABCG1
Ensembl Gene ID:
ENSAPLG00000008841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009239
124150379 - 124199566
49188