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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124159652_124160355_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124159652 - 124160355
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TCCTTTCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
PPVMFFDEPTSGLDSASCFQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.2
0.72
0.8
81
29.9
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
ABCG1
Ensembl Gene ID:
ENSAPLG00000008841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009239
124150379 - 124199566
49188