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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124167076_124196456_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124167076 - 124196456
Intron Length:
29381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAA
U12 Branch Point Sequence:
ATTCAGTGAACT
Flanking Amino Acid:
IQEGPWWRKKGYKTLLKGIS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
51.9
0.05
1.2
44.7
38.6
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
47.9
-0
2.3
74.35
41.6

Associated Gene:

Gene:
ABCG1
Ensembl Gene ID:
ENSAPLG00000008841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009239
124150379 - 124199566
49188