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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12418855_12419735_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12418855 - 12419735
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTCTCTCACA
Flanking Amino Acid:
KAVLKLVNSSSNDVEGNVKH
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
84.5
33
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.7
0.78
0.7
79.7
25.9
Minor 5ss
41.5
-0.9
3
60.7
43.8
Minor BPS
54
0.12
2.1
71.45
41.1

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685