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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12422190_12423355_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12422190 - 12423355
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATTT
5'SS Class:
major
3'SS Sequence:
CATTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TAATATTGAAAC
Flanking Amino Acid:
AMITVIYRTQRPQYRILGQI
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.2
81.6
33.2
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
82.3
0.73
0.8
73.7
36.6
Minor 5ss
39.3
-1.2
3.2
56.7
47.5
Minor BPS
49
-0.1
1.7
60.21
37.8

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685