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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12424851_12425739_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12424851 - 12425739
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
GTAATATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAAAA
Flanking Amino Acid:
IGYLFEPLPQTVLAAIVMVN
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
64.2
0.32
1
55.2
44.5
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
57.7
0.24
1.6
66.07
39.9

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685