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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124272311_124274584_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124272311 - 124274584
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGGACTCTGACT
Flanking Amino Acid:
METPGSTCRTRCHAARSLKT
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
77.3
37.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.6
0.64
1
72.9
42.2
Minor 5ss
35.6
-1.6
3.8
56.2
48
Minor BPS
50.8
0.11
1.7
69.4
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002409
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002417
124270287 - 124279768
9482