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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12427244_12427334_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12427244 - 12427334
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTATAGTAACT
Flanking Amino Acid:
GVDVVGNIPQGLRAPAVPEI
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
59.5
42.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
1
83.7
31.6
Minor 5ss
31
-2.2
3.8
37.1
47.5
Minor BPS
49.1
0.01
2.2
76.04
40.3

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685