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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12427418_12428669_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12427418 - 12428669
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGCTACATG
Flanking Amino Acid:
PVPIPMEIIVVIIGTGVSAG
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
65.4
46
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.9
0.74
0.8
81.5
35.9
Minor 5ss
33.8
-1.8
2.9
38.2
40.8
Minor BPS
46.1
-0.4
2.5
62.41
46.2

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685