About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124275753_124276599_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124275753 - 124276599
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGATCTTTAAAA
Flanking Amino Acid:
LLTSSGYTAEGVYTIFEDLH
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
78.6
37.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
78.6
0.64
0.8
75.7
32.8
Minor 5ss
33.5
-1.9
3.2
40.3
45.6
Minor BPS
71
0.65
1.3
74.57
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002409
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002417
124270287 - 124279768
9482