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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124276743_124277437_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124276743 - 124277437
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TGTTCACAAAGT
Flanking Amino Acid:
WSECGTEIETNESNTTVKTI
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.4
61
44
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
80.9
0.7
0.9
72.5
42.4
Minor 5ss
37.4
-1.4
2.9
50.8
38.5
Minor BPS
44.4
-0.3
2.4
70.75
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002409
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002417
124270287 - 124279768
9482