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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12428823_12429785_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12428823 - 12429785
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTAATTATAATA
Flanking Amino Acid:
RYSGPLSVVYSIVAVFSKIT
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.3
0.66
1
72.4
42.2
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
48.8
-0.1
1.5
58.24
35

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685