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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12435042_12436920_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12435042 - 12436920
Intron Length:
1879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGGTTT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
TAGTGCCTAACT
Flanking Amino Acid:
TLRQKIAHSCRCSSKKAKSY
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
70.8
41.9
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
41.8
-0.9
3.7
64.2
47.3
Minor BPS
56.7
0.29
2.1
78
43.9

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685