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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12437135_12449208_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12437135 - 12449208
Intron Length:
12074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTACTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TTTTTGTCTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
71.6
0.49
1
63.8
41.8
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
48.3
-0
2.5
79.84
42.1

Associated Gene:

Gene:
SLC26A5
Ensembl Gene ID:
ENSAPLG00000011708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012326
12417656 - 12449340
31685