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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124390257_124391010_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124390257 - 124391010
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTAAATAACC
Flanking Amino Acid:
LEGRSSPPSTDSPVKTPVKV
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.4
0.71
0.9
78
35.8
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
51
0.01
2.1
71.12
39

Associated Gene:

Gene:
C2CD2
Ensembl Gene ID:
ENSAPLG00000001983
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047455
124364659 - 124396339
31681
ENSAPLT00000002063
124364659 - 124400033
35375