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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124413608_124416222_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124413608 - 124416222
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TATAACTCAATT
Flanking Amino Acid:
VKDSFVLSRARSSLPSNLEI
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73
0.52
0.8
71
33.4
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
56.8
0.29
1.8
75.85
40.3

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952