About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124424112_124424265_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
124424112 - 124424265
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGCCGAG
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTGATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCTGATCC
Flanking Amino Acid:
ICFLTSAATSGRFAHHQNTM
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.02
1.2
41.1
41.9
Major BPS
79
0.72
1
69
38.9
Major PPT
76.9
0.6
0.9
69.5
40.8
Minor 5ss
33.9
-1.8
3.5
36.4
48
Minor BPS
57.3
0.21
1.7
72.59
38.1

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952