Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124426455_124427974_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

124426455 - 124427974

Intron Length:

1520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAATG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAA

U12 Branch Point Sequence:

GTTTCTTTTACA

Flanking Amino Acid:

SALEFHNCRTDDKTFQCEMC

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

80.6

33.8

Major BPS

62.9

0.32

1.2

65.3

38.6

Major PPT

89.2

0.88

0.7

83.7

31.3

Minor 5ss

31.6

-2.1

39.4

46.1

Minor BPS

71.8

0.68

1.6

80.12

35.4

Associated Gene:

Gene:

PRDM15

Ensembl Gene ID:

ENSAPLG00000001239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001518

124410404 - 124440355

29952