About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124430630_124431550_F


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
124430630 - 124431550

Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATTGCAT

5'SS Class:
major

3'SS Sequence:
CTACCCTACACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTTAT

U12 Branch Point Sequence:
TTTATTAGAACA

Flanking Amino Acid:
LRDHIHVHFKDIALMDDHQR

Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.4
0.5
1.1
64.1
41.4

Major BPS
83.9
0.84
1
73.9
41.3

Major PPT
67.1
0.39
0.9
61
33.9

Minor 5ss
38.6
-1.3
3.3
55.9
48.3

Minor BPS
51
0.03
1.7
69.66
36.1

Associated Gene:

Gene:
PRDM15

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

124410404 - 124440355
29952