About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124431686_124433796_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124431686 - 124433796
Intron Length:
2111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTTA
5'SS Class:
major
3'SS Sequence:
GTTCATTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTCACT
Flanking Amino Acid:
PHKYSCKRCQLTFGRGKEYL
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75
38.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.2
0.57
0.9
68.7
37
Minor 5ss
47.9
-0.2
2.9
66.7
44.7
Minor BPS
63.7
0.51
2.1
84.99
41.5

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952