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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124433961_124434388_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124433961 - 124434388
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACGA
5'SS Class:
major
3'SS Sequence:
TCTCTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
AAAAGCATGACA
Flanking Amino Acid:
RENLPDPNVQKYIHPCEICG
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.4
40.6
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
79.4
0.66
0.9
76.2
37.8
Minor 5ss
33
-1.9
3.1
39.7
39.9
Minor BPS
44
-0.4
2
52.4
38.7

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952