About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124436615_124436730_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124436615 - 124436730
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
CATTTGCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
TMETHKLIHTVGKQWTCSVC
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
68
0.41
1
59.7
41.4
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952