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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124438792_124439186_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124438792 - 124439186
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCATCACTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTGCTTAGTG
Flanking Amino Acid:
IDASSIGIVQPELALEQSEL
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.2
0.59
0.9
67
39.1
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
59.2
0.15
2.1
71.08
42.6

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952