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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124439400_124439878_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124439400 - 124439878
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
AGATATTTGACG
Flanking Amino Acid:
TNSAVQSIQQVVVTLGDPNV
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
52
-0
1.6
55.3
39.6

Associated Gene:

Gene:
PRDM15
Ensembl Gene ID:
ENSAPLG00000001239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001518
124410404 - 124440355
29952