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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124449370_124449405_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124449370 - 124449405
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGTAAAAT
5'SS Class:
weak_major
3'SS Sequence:
CTTGTGTTTAGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
ATGTTGTTACTT
Flanking Amino Acid:
VQRLQVSCRVHYRCWWRNCE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1
57.5
34.4
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
60.1
0.23
1.7
67.9
42.5
Minor 5ss
37.7
-1.4
3.2
53.8
44.7
Minor BPS
47.9
-0
2.2
69.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020580
124448144 - 124463666
15523