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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124449637_124453457_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124449637 - 124453457
Intron Length:
3821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTTGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACT
Flanking Amino Acid:
CNWENCNVSCVTFNNPEWFY
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
60.6
40.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.6
0.67
0.9
81.2
36.5
Minor 5ss
47.6
-0.2
2.5
58
46.6
Minor BPS
67.6
0.63
1.4
77.06
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001220
124448144 - 124463666
15523