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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124457208_124457643_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124457208 - 124457643
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TATTTAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTATTTAAAT
Flanking Amino Acid:
DHVKRQVSEDKQIFVCQNCH
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.9
37.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.1
0.56
1
72.3
41.5
Minor 5ss
33.9
-1.8
3.2
41.7
40.3
Minor BPS
66.5
0.6
1.6
82.06
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020580
124448144 - 124463666
15523
ENSAPLT00000017846
124457150 - 124466468
9319
ENSAPLT00000001220
124448144 - 124463666
15523