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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124457722_124460394_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124457722 - 124460394
Intron Length:
2673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTTCTTTCTACA
Flanking Amino Acid:
RLLRDHMRVHVNRVTCPLCD
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
49.7
-0
1.8
68.48
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020580
124448144 - 124463666
15523
ENSAPLT00000017846
124457150 - 124466468
9319
ENSAPLT00000001220
124448144 - 124463666
15523