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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124460516_124461554_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124460516 - 124461554
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
ACCTTGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTTGTTTTACCT
Flanking Amino Acid:
RPFRCHLCDSSFKNTYDLHK
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
79.7
0.67
0.9
76.4
37.1
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
63.6
0.5
1.7
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017846
124457150 - 124466468
9319
ENSAPLT00000001220
124448144 - 124463666
15523
ENSAPLT00000020580
124448144 - 124463666
15523