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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124461685_124462502_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124461685 - 124462502
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCACATGTG
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATTACTCTAACA
Flanking Amino Acid:
SQTLKQHYKRSNGILRYKCH
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.3
58.8
42.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
69.1
0.43
1
67.5
37.5
Minor 5ss
25.5
-2.8
4.3
35.2
42.7
Minor BPS
63.2
0.41
1.7
75.51
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020580
124448144 - 124463666
15523
ENSAPLT00000017846
124457150 - 124466468
9319
ENSAPLT00000001220
124448144 - 124463666
15523