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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124462619_124463266_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124462619 - 124463266
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTATTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTGTTTGTAACC
Flanking Amino Acid:
AHNLSSHSRFRYKEDDEGHM
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69
0.43
0.8
66.3
35.7
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
53.3
0.08
2
65.93
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020580
124448144 - 124463666
15523
ENSAPLT00000001220
124448144 - 124463666
15523