Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124462619_124466443_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

124462619 - 124466443

Intron Length:

3825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAC

5'SS Class:

strong_major

3'SS Sequence:

GACGGGTCCCGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TGTGTCTGGACG

Flanking Amino Acid:

AHNLSSHSRFSGVSQQCP*

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

80.1

28.4

Major BPS

72.7

0.56

30.1

Major PPT

43.2

-0.3

1.6

34.6

40.8

Minor 5ss

46.6

-0.3

2.5

60.6

44.5

Minor BPS

-0.1

1.7

59.5

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001186

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017846

124457150 - 124466468

9319