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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124471005_124475168_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124471005 - 124475168
Intron Length:
4164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TTTACCATATAT
Flanking Amino Acid:
KCSPSLHVDEKERMELLEEA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.3
34.3
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
74.1
0.54
0.8
69.4
30.1
Minor 5ss
35.2
-1.7
3.1
44.8
36.8
Minor BPS
52.7
0.16
2
79.55
41.7

Associated Gene:

Gene:
RIPK4
Ensembl Gene ID:
ENSAPLG00000016253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016957
124470829 - 124488873
18045