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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124475461_124482749_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124475461 - 124482749
Intron Length:
7289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACACACTTAATT
Flanking Amino Acid:
ILLDAHYHVKISDFGLAKCN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
59.9
0.39
1.5
70.02
40.6

Associated Gene:

Gene:
RIPK4
Ensembl Gene ID:
ENSAPLG00000016253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016957
124470829 - 124488873
18045