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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124482899_124483708_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124482899 - 124483708
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTAAAAGT
Flanking Amino Acid:
RCFDTKHDVYSFSIVIWGVL
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
80.2
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.8
77.5
36.5
Minor 5ss
34.9
-1.7
2.7
40.9
45.4
Minor BPS
51.3
0.12
2.2
80.33
41.9

Associated Gene:

Gene:
RIPK4
Ensembl Gene ID:
ENSAPLG00000016253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016957
124470829 - 124488873
18045