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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124483759_124484859_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124483759 - 124484859
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
GVLTQKKPFAEENNILHIMV
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
RIPK4
Ensembl Gene ID:
ENSAPLG00000016253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016957
124470829 - 124488873
18045