About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124486131_124486647_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124486131 - 124486647
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
GCTTCTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCTTTCTAAAAT
Flanking Amino Acid:
TKSSPKQRSEGMSALSQPKQ
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.4
0.48
1
71.4
33.3
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
56.3
0.28
1.8
72.05
45.1

Associated Gene:

Gene:
RIPK4
Ensembl Gene ID:
ENSAPLG00000016253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016957
124470829 - 124488873
18045