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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124551787_124556733_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
124551787 - 124556733
Intron Length:
4947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGTA
5'SS Class:
major
3'SS Sequence:
CCTTCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTAACGTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
74.3
36.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82
0.72
0.7
79.9
25.4
Minor 5ss
35.3
-1.7
3.5
45.8
44.7
Minor BPS
56.8
0.29
2.2
79.3
42.1

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016878
124551721 - 124569624
17904