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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124558159_124558986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124558159 - 124558986
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTATCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTCCTGTAATG
Flanking Amino Acid:
MTSTVGPPPYFENHG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
73.2
0.52
0.9
71.2
39.6
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
56.4
0.06
2.1
68.31
39.9

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038937
124549062 - 124569787
20726
ENSAPLT00000038564
124557512 - 124569624
12113
ENSAPLT00000027642
124549062 - 124569624
20563
ENSAPLT00000016878
124551721 - 124569624
17904