Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124559180_124559487_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

124559180 - 124559487

Intron Length:

308

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

GTAAACCTAATT

Flanking Amino Acid:

APSTGRTCSSGVKKTIIIVI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.9

82.8

36.4

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

83.5

0.75

0.9

80.8

36.8

Minor 5ss

33.6

-1.9

4.2

55.7

48.5

Minor BPS

49.1

0.01

1.9

68.83

41.3

Associated Gene:

Gene:

TMPRSS2

Ensembl Gene ID:

ENSAPLG00000016160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027642

124549062 - 124569624

20563

ENSAPLT00000016878

124551721 - 124569624

17904

ENSAPLT00000038937

124549062 - 124569787

20726

ENSAPLT00000038564

124557512 - 124569624

12113