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Intron Name: Anas_platyrhynchos_platyrhynchos_1_124559572_124560804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

124559572 - 124560804

Intron Length:

1233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

TTCTCCTTACAG

Flanking Amino Acid:

AVGAFFIWYFVENPCLGSLE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.8

86.3

28.9

Major BPS

70.1

0.5

70.3

31.9

Major PPT

89.8

0.9

0.6

84.3

23.7

Minor 5ss

39.6

-1.2

3.2

55.5

42.8

Minor BPS

62.1

0.24

1.8

68.4

44.9

Associated Gene:

Gene:

TMPRSS2

Ensembl Gene ID:

ENSAPLG00000016160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016878

124551721 - 124569624

17904

ENSAPLT00000038937

124549062 - 124569787

20726

ENSAPLT00000038564

124557512 - 124569624

12113

ENSAPLT00000027642

124549062 - 124569624

20563