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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124560922_124562327_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124560922 - 124562327
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
CPNGEDENRCVRLFGPNFIL
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.7
0.6
1
73.4
36.4
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016878
124551721 - 124569624
17904
ENSAPLT00000038937
124549062 - 124569787
20726
ENSAPLT00000038564
124557512 - 124569624
12113
ENSAPLT00000027642
124549062 - 124569624
20563