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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124562458_124563275_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124562458 - 124563275
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATA
Flanking Amino Acid:
KIACKDIGYNVDTYYSSSGV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
39.8
-1.1
3
51.1
45.2
Minor BPS
81.6
0.99
1
83.67
30.1

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038937
124549062 - 124569787
20726
ENSAPLT00000038564
124557512 - 124569624
12113
ENSAPLT00000027642
124549062 - 124569624
20563
ENSAPLT00000016878
124551721 - 124569624
17904