About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124565024_124566754_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124565024 - 124566754
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACCTTTTAACA
Flanking Amino Acid:
WLVTAAHCVEGQLSDPYVWR
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
62.3
0.38
1.2
63.78
36.4

Associated Gene:

Gene:
TMPRSS2
Ensembl Gene ID:
ENSAPLG00000016160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038564
124557512 - 124569624
12113
ENSAPLT00000027642
124549062 - 124569624
20563
ENSAPLT00000016878
124551721 - 124569624
17904
ENSAPLT00000038937
124549062 - 124569787
20726